Identification and Genetic Diversity of Phalanger sp. Origin Papua Based on 12S rRNA Gene Sequence

Authors

  • Budi Prasetyo Biology Study Program, Faculty of Science and Technology, Open University, Cabe Raya Street, Pondok Cabe, Pamulang District, South Tangerang City, Banten Province, 15418, Indonesia

Keywords:

genetic diversity, Phalanger sp, 12S rRNA gene

Abstract

Taxonomically Phalanger sp. or cuscus is a member of the Phalangeridae family, this animal has a distribution that is widely found in eastern Indonesia, has endemic status, its existence is legally protected because it is often hunted and consumed for food by the surrounding community. The study of molecular biology is one of the efforts in the management of cuscus conservation in Indonesia, namely by completing the database and molecular information in the Gene Bank so that later it is hoped that it can be used to trace kinship relationships. The aim of the study was to identify Phalanger sp. from Papua molecularly using COX1, ND4L, and 12S rRNA sequences. The methodology used is DNA isolated from blood samples of Phalanger sp. as template DNA in the amplification process by PCR. This study used 12S rRNA primers. The results showed that 12S rRNA could be used to identify Phalanger sp. while the COX1 and ND4L sequences have not been successfully used to identify Phalanger sp.

References

Conservation International, “Lokakarya Penentuan Prioritas Konservasi Keanekaragaman Hayati Irian Jaya.” C.I, Jayapura, 1999.

R. G. Petocz, “Konservasi alam dan pembangunan di Irian Jaya.” Grafiti Press. Jakarta, 1987.

Sutarno and A. D. Setyawan, “Biodiversitas Indonesia: Penurunan dan upaya pengelolaan untuk menjamin kemandirian bangsa.” PROS SEM NAS MASY BIODIV INDON 1(1), 1-13, 2015.

F. Pattiselanno, “Perburuan Kuskus (Phalangeridae) oleh Masyarakat Napan di Pulau Ratewi, Nabire, Papua.” Biodiversitas, 8(4), 274-278, 2007.

J. Menzies, “A handbook of new guinea marsupials and monotremes.” Kristen Press Inc: Madang, PNG, 1991.

M. Usmany, H. Tuaputty, and P. Kakisina, “Kajian Fenotip Kuskus (Famili Phalangeridae) di Penangkaran Desa Lumoli, Kecamatan Piru, Maluku.” Jurnal Sain Veteriner 33(2), 180-189, 2015.

J. Schmitz, M. Ohme, and H. Zischler, “The Complete Mitochondrial Sequence of Tarsius bancanus: Evidence for an extensive nucleotide Compositional Plasticity of Primate Mitochondrial DNA.” Mol Biol. Evol. 19, 544- 553, 2002.

Hou, W., Y. Chen, X. Wu, J. Hu, Z. Peng, J. Yang, Z. Tang, C. Zhou, Y. Li, S. Yang, Y. Du, L. Kong, Z. Ren, H. Zhang, and S. Shui, “A Complete Mitochondrial Genome sequence of Asian Black bear Sichuan Subspecies (Ursus thibetanus mupinensis).” Int. J. Biol. Sci. 3(2), 85-90, 2006.

I. M. Mackie, S. E. Pryde, C. G. Sotelo, I. Medina, R. P. Martin, J. Quinteiro, M. R. Mendez, and H. Rehbein, “Challenges in the identification of species of canned fish.” Trends in Food Science & Technology. 10(1), 9- 14, 1999.

A. K. Lockley, and R. G. Bardsley, “DNA-based methods for food authentication.” Trends in Food Science & Technology. 11(2), 67-77, 2000.

F. Teletchea, C. Maudet, and C. Hanni, “Food and forensic molecular identification: update and challenges.” Trends in Biotechnology 23(7), 359-366, 2005.

A. Baaka and R. Widayanti, “Kajian Deoxyribonucleic Acid (DNA) Barcode pada Spesies Tarsius bancanus, Tarsius spectrum, dan Tarsius dianae dengan Menggunakan Gen Cytochrome Oxidase Sub-Unit I (COX1).” Jurnal Kedokteran Hewan 7(2), 132-136, 2013.

S. Zhang, Y. Zhang, X. Zheng, Y. Chen, H. Deng, D. Wang, U. Wei, Y. Zang, L. Nie, and Q. Wu, “Molecular phylogenetic systematics of twelve species of Acipenseriformes based on mtDNA ND4L-ND4 gene sequence analysis.” Sci. China, C, Life Sci. 43(2), 129-37, 2000.

R. Widayanti, “Kajian Penanda Genetik Gen Cytochrome b dan Daerah D-Loop pada Tarsius sp.” Program Studi Primatologi. Institut Pertanian Bogor. Bogor, 2006.

K. A. Abd-Elsalam, “Bioinformatic tools and guideline for PCR primer design”. African Journal of Biotechnology 2(5), 91-95, 2003.

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Published

2023-06-10

How to Cite

Prasetyo, B. (2023). Identification and Genetic Diversity of Phalanger sp. Origin Papua Based on 12S rRNA Gene Sequence. International Journal of Sciences: Basic and Applied Research (IJSBAR), 68(1), 247–255. Retrieved from https://www.gssrr.org/index.php/JournalOfBasicAndApplied/article/view/15767

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